Modelling and stability of FAST TCP

We introduce a discrete-time model of FAST TCP that fully captures the effect of self-clocking and compare it with the traditional continuous-time model. While the continuous-time model predicts instability for homogeneous sources sharing a single link when feedback delay is large, experiments suggest otherwise. Using the discrete-time model, we prove that FAST TCP is locally asymptotically stable in general networks when all sources have a common round-trip feedback delay, no matter how large the delay is. We also prove global stability for a single bottleneck link in the absence of feedback delay. The techniques developed here are new and applicable to other protocols

FAST TCP: Motivation, Architecture, Algorithms, Performance

We describe FAST TCP, a new TCP congestion control algorithm for high-speed long-latency networks, from design to implementation. We highlight the approach taken by FAST TCP to address the four difficulties which the current TCP implementation has at large windows. We describe the architecture and summarize some of the algorithms implemented in our prototype. We characterize its equilibrium and stability properties. We evaluate it experimentally in terms of throughput, fairness, stability, and responsiveness

Neoadjuvant sipuleucel-T induces both Th1 activation and immune regulation in localized prostate cancer.

Sipuleucel-T is the only FDA-approved immunotherapy for metastatic castration-resistant prostate cancer. The mechanism by which this treatment improves survival is not fully understood. We have previously shown that this treatment can induce the recruitment of CD4 and CD8 T cells to the tumor microenvironment. In this study, we examined the functional state of these T cells through gene expression profiling. We found that the magnitude of T cell signatures correlated with the frequency of T cells as measured by immunohistochemistry. Sipuleucel-T treatment was associated with increased expression of Th1-associated genes, but not Th2-, Th17 - or Treg-associated genes. Post-treatment tumor tissues with high CD8+T cell infiltration was associated with high levels of CXCL10 expression. On in situ hybridization, CXCL10+ cells colocalized with CD8+T cells in post-treatment prostatectomy tumor tissue. Neoadjuvant sipuleucel-T was also associated with upregulation of immune inhibitory checkpoints, including CTLA4 and TIGIT, and downregulation of the immune activation marker, dipeptidylpeptidase, DPP4. Treatment-associated declines in serum PSA were correlated with induction of Th1 response. In contrast, rises in serum PSA while on treatment were associated with the induction of multiple immune checkpoints, including CTLA4, CEACAM6 and TIGIT. This could represent adaptive immune resistance mechanisms induced by treatment. Taken together, neoadjuvant sipuleucel-T can induce both a Th1 response and negative immune regulation in the prostate cancer microenvironment

Flaw-driven Failure in Nanostructures

Understanding failure in nanomaterials is critical for the design of reliable structural materials and small-scale devices that have components or microstructural elements at the nanometer length scale. No consensus exists on the effect of flaws on fracture in bulk nanostructured materials or in nanostructures. Proposed theories include nanoscale flaw tolerance and maintaining macroscopic fracture relationships at the nanoscale with virtually no experimental support. We explore fracture mechanisms in nanomaterials via nanomechanical experiments on nanostructures with pre-fabricated surface flaws in combination with molecular dynamics simulations. Nanocrystalline Pt cylinders with diameters of ~120 nm with intentionally introduced surface notches were created using a template-assisted electroplating method and tested in uniaxial tension in in-situ SEM. Experiments demonstrate that 8 out of 12 samples failed at the notches and that tensile failure strengths were ~1.8 GPa regardless of whether failure occurred at or away from the flaw. These findings suggest that failure location was sensitive to the presence of flaws, while strength was flaw-insensitive. Molecular dynamics simulations support these observations and show that incipient plastic deformation commences via nucleation and motion of dislocations in concert with grain boundary sliding. We postulate that such local plasticity reduces stress concentration ahead of the flaw to levels comparable with the strengths of intrinsic microstructural features like grain boundary triple junctions, a phenomenon unique to nano-scale solids that contain an internal microstructural energy landscape. This mechanism causes failure to occur at the weakest link, be it an internal inhomogeneity or a surface feature with a high local stress

Global Exponential Stability of FAST TCP

We consider a single-link multi-source network with the FAST TCP sources. We propose a continuous-time dynamic model for the FAST TCP sources and a static model to describe the queuing delay behavior at the link. The proposed model turns out to be in a form revealing the network feedback delay, which allows us to analyze FAST TCP in due consideration of the network feedback delay. Based on the proposed model, we show the boundedness of both each source's congestion window and the queuing delay at the link; and the global exponential stability under a trivial condition that each source's congestion control parameter a is positive. The simulation results illustrate the validity of the proposed model and the global exponential stability of FAST TCP

Chemical Methods for the Simultaneous Quantitation of Metabolites and Proteins from Single Cells

We describe chemical approaches for integrated metabolic and proteomic assays from single cells. Quantitative assays for intracellular metabolites, including glucose uptake and three other species, are designed as surface-competitive binding assays with fluorescence readouts. This enables integration into a microarray format with functional protein immunoassays, all of which are incorporated into the microchambers of a single-cell barcode chip (SCBC). By using the SCBC, we interrogate the response of human-derived glioblastoma cancer cells to epidermal growth factor receptor inhibition. We report, for the first time, on both the intercellular metabolic heterogeneity as well as the baseline and drug-induced changes in the metabolite–phosphoprotein correlation network

Mechanisms of Failure in Nanoscale Metallic Glass

The emergence of size-dependent mechanical strength in nanosized materials is now well-established, but no fundamental understanding of fracture toughness or flaw sensitivity in nanostructures exists. We report the fabrication and in situ fracture testing of ∼70 nm diameter Ni–P metallic glass samples with a structural flaw. Failure occurs at the structural flaw in all cases, and the failure strength of flawed samples was reduced by 40% compared to unflawed samples. We explore deformation and failure mechanisms in a similar nanometallic glass via molecular dynamics simulations, which corroborate sensitivity to flaws and reveal that the structural flaw shifts the failure mechanism from shear banding to cavitation. We find that failure strength and deformation in amorphous nanosolids depend critically on the presence of flaws